Computational Model Library

Our mission is to help computational modelers develop, document, and share their computational models in accordance with community standards and good open science and software engineering practices. Model authors can publish their model source code in the Computational Model Library with narrative documentation as well as metadata that supports open science and emerging norms that facilitate software citation, computational reproducibility / frictionless reuse, and interoperability. Model authors can also request private peer review of their computational models. Models that pass peer review receive a DOI once published.

All users of models published in the library must cite model authors when they use and benefit from their code.

Please check out our model publishing tutorial and feel free to contact us if you have any questions or concerns about publishing your model(s) in the Computational Model Library.

Displaying 10 of 531 results for "Jingjing Cai" clear search

Peer reviewed CapOvCWD

Aniruddha Belsare | Published Tuesday, September 09, 2025 | Last modified Tuesday, November 11, 2025

CapOvCWD is an agent-based model that simulates a captive cervid herd composed of adults and fawns. The model deer population is initialized using data on herd size and composition from captive facility records. Individual deer domiciliary history and annual CWD testing records inform the herd size and sample size (for CWD testing), respectively. The model can be used to iteratively estimate the facility level annual CWD detection probability. Detection probability estimates can be further refined by incorporating multiyear CWD testing data. This approach can be particularly useful for interpreting negative test results from a subset of the captive herd. Facility level detection probability estimates provide a comprehensive and standardized risk metric that reflects the likelihood of undetected CWD in the facility.

An Agent Based Model that explores the deployment of hydrogen among a regional industrial cluster in the Netherlands, consisting of 15 companies. The companies seek to decarbonize by replacing their natural gas by hydrogen.
The model integrates technical characteristics as well as company motivations to transition to hydrogen. The baseline model only considers individual investments where company can locally produce hydrogen. If they reach the backbone threshold, companies can also consider buying hydrogen through a connection to the national hydrogen network. The second scenario considers that companies can participate in a joint investment to get an electrolyzer to locally produce the hydrogen.
Two experiments look at the impact of the sectoral configuration and at the impact of subsidy conditions on the region’s hydrogen transition

We introduce a model of prediction markets that uses opinion dynamics as its underlying mechanism for price formation. We base the opinion dynamics on the Deffuant model of bounded rationality. We have used this model to show that price formation in prediction markets can be robustly explained by opinion dynamics, and that the model can also explain phase transitions depending on just two parameters.

The current model is designed to examine whether—and under what conditions—minority influence can generate social change. Specifically, the model assesses whether empirically validated psychological mechanisms of indirect minority influence, operating in combination, can produce system-level social change, defined as the initial minority opinion becoming the majority position. Notably, this model formalizes Moscovici’s (1976) genetic model of social influence using agent-based modeling.

An Agent-Based Model of Flood Risk and Insurance

J Dubbelboer I Nikolic K Jenkins J Hall | Published Monday, July 27, 2015 | Last modified Monday, October 03, 2016

A model to show the effects of flood risk on a housing market; the role of flood protection for risk reduction; the working of the existing public-private flood insurance partnership in the UK, and the proposed scheme ‘Flood Re’.

Dynamic Interbank Network Simulator

Valentina Guleva | Published Wednesday, November 23, 2016 | Last modified Monday, April 13, 2020

The model provides instruments for the simulation of interbank network evolution. There are tools for dynamic network analysis, allowing to evaluate graph topological invariants, thermodynamic network features and combinational node-based features.

The wisdom of the crowd refers to the phenomenon in which a group of individuals, each making independent decisions, can collectively arrive at highly accurate solutions—often more accurate than any individual within the group. This principle relies heavily on independence: if individual opinions are unbiased and uncorrelated, their errors tend to cancel out when averaged, reducing overall bias. However, in real-world social networks, individuals are often influenced by their neighbors, introducing correlations between decisions. Such social influence can amplify biases, disrupting the benefits of independent voting. This trade-off between independence and interdependence has striking parallels to ensemble learning methods in machine learning. Bagging (bootstrap aggregating) improves classification performance by combining independently trained weak learners, reducing bias. Boosting, on the other hand, explicitly introduces sequential dependence among learners, where each learner focuses on correcting the errors of its predecessors. This process can reinforce biases present in the data even if it reduces variance. Here, we introduce a new meta-algorithm, casting, which captures this biological and computational trade-off. Casting forms partially connected groups (“castes”) of weak learners that are internally linked through boosting, while the castes themselves remain independent and are aggregated using bagging. This creates a continuum between full independence (i.e., bagging) and full dependence (i.e., boosting). This method allows for the testing of model capabilities across values of the hyperparameter which controls connectedness. We specifically investigate classification tasks, but the method can be used for regression tasks as well. Ultimately, casting can provide insights for how real systems contend with classification problems.

This is an extension of the basic Suceptible, Infected, Recovered (SIR) model. This model explores the spread of disease in two spaces, one a treatment, and one a control. Through the modeling options, one can explore how changing assumptions about the number of susceptible people, starting number of infected people, the disease’s infection probability, and average duration impacts the outcome. In addition, this version allows users to explore how public health interventions like social distancing, masking, and isolation can affect the number of people infected. The model shows that the interactions of agents, and the interventions can drastically affect the results of the model.

We used the model in our course about COVID-19: https://www.csats.psu.edu/science-of-covid19

barterNet

Jon Pearce Justin Rietz | Published Wednesday, January 08, 2025

BarterNet is a platform for modeling early barter networks with the aim of learning how supply and demand for a good determine if traders will learn to use that good as a form of money. Traders use a good as money when they offer to trade for it even if they can’t consume it, but believe that they can subsequently trade it for a good they can consume in the near future.

An agent-based model of adaptive cycles of the spruce budworm

Julia Schindler | Published Saturday, August 18, 2012 | Last modified Saturday, April 27, 2013

This is an empirically calibrated agent-based model that replicates spruce-budworm outbreaks, one of the most cited adaptive cycles reported. The adaptive-cycle metaphor by L. H. Gunderson and C. S. Holling posits the cross-case existence of repeating cycles of growth, conservation, collapse, and renewal in many complex systems, triggered by loss of resilience. This model is one of the first agent-based models of such cycles, with the novelty that adaptive cycles are not defined by system- […]

Displaying 10 of 531 results for "Jingjing Cai" clear search

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