Our mission is to help computational modelers develop, document, and share their computational models in accordance with community standards and good open science and software engineering practices. Model authors can publish their model source code in the Computational Model Library with narrative documentation as well as metadata that supports open science and emerging norms that facilitate software citation, computational reproducibility / frictionless reuse, and interoperability. Model authors can also request private peer review of their computational models. Models that pass peer review receive a DOI once published.
All users of models published in the library must cite model authors when they use and benefit from their code.
Please check out our model publishing tutorial and feel free to contact us if you have any questions or concerns about publishing your model(s) in the Computational Model Library.
Displaying 3 of 3 results for "Akihiro Koyama" clear search
Soil microbe-predator model with enzymes
Randall Boone John C Moore Akihiro Koyama Kirstin Holfelder | Published Thursday, November 21, 2013We seek to improve understanding of roles enzyme play in soil food webs. We created an agent-based simulation of a simple food web that includes enzymatic activity. The model was used in a publication, Moore et al. (in press; Biochemistry).
Netlogo model ` Effect of Network Homophily and Partisanship on Social Media to “Oil Spill” Polarizations’
takuya nagura | Published Saturday, September 13, 2025This model was utilized for the simulation in the paper titled Effect of Network Homophily and Partisanship on Social Media to “Oil Spill” Polarizations. It allows you to examine whether oil spill polarization occurs through people’s communication under various conditions.
・Choose the network construction conditions you’d like to examine from the “rewire-style” chooser box.
・Select the desired strength of partisanship from the “partisanlevel” chooser box. You can also set the strength manually in the code tab.
・You can set the number of dynamic topics using the “number-of-topics” slider.
・Use the “divers-of-opinion” slider to set the number of preference types for each dynamic topic.
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MoPAgrIB: simulating savannah landscape mosaic under shifting cultivation
Nicolas Becu Marc Deconchat Eric Garine Kouami Kokou Christine Raimond | Published Monday, May 27, 2013 | Last modified Tuesday, January 21, 2014MoPAgrIB model simulates the movement of cultivated patches in a savannah vegetation mosaic ; how they move and relocate through the landscape, depending on farming practices, population growth, social rules and vegetation growth.